1. Installation on Linux & Mac OSX¶
To Install TEMPy you need to follow these steps:
Download¶
TEMPy2 now available: here. You can find tutorial files there
Requirements
You need to install the following software before installing TEMPy. These can be installed using pip .
1. Python
We recommend that you use 3.8
2. NumPy
We recommend that you use the latest version of NumPy, but v1.6 and later are supported.
3. SciPy
We recommend that you use the latest version of Scipy, but v0.10.0 and later are supported.
4. Biopython
We recommend that you use the latest version of BioPython, but v1.58 and later are supported.
5. matplotlib
We recommend latest versions of matplotlib
Optional: for use of gamma-TEMPy. We have tested version 1.6.5, later versions are supported.
Default installation of these packages requires root (Linux & Mac OSX) privileges.
An appropriate version of Python is very likely to be available by default on recent Linux and Mac OSX systems. NumPy , SciPy and Biopython modules should be installed in user directories. Please read the installation instructions for these packages carefully.
Installation
tar -xzf tempy2.tar.xz
cd tempy
python setup.py build
sudo python setup.py install
If you don’t have root privileges see alternative installation scheme in Installing Python Modules .